PyClone 源码安装

发表于2020年7月28日由daizao 
#由于0.13.1版本numba依赖关系作者描述不清不建议使用
#PyClone 0.13.0 install
git clone -b 0.2.3 https://github.com/Roth-Lab/pydp.git
cd pydp/
pip install . --prefix=/opt/sysoft/pydp-0.2.3
echo 'export PYTHONPATH=/opt/sysoft/pydp-0.2.3/lib/python2.7/site-packages:$PYTHONPATH' >> ~/.bashrc.pydp-0.2.3
cd ..
rm -rf pydp/

pip install 'matplotlib>=1.2.0'
pip install 'numpy>=1.6.2'
pip install 'pandas>=0.11'
pip install 'scipy>=0.11'
pip install 'seaborn>=0.6.0'

wget -c https://bitbucket.org/aroth85/pyclone/downloads/PyClone-0.13.0.tar.gz
tar -zxf PyClone-0.13.0.tar.gz
cd PyClone-0.13.0/
pip install . --prefix=/opt/biosoft/pyclone-0.13.0
echo 'export PATH=/opt/biosoft/pyclone-0.13.0/bin:$PATH' >> ~/.bashrc.pyclone-0.13.0
echo 'export PYTHONPATH=/opt/biosoft/pyclone-0.13.0/lib/python2.7/site-packages:$PYTHONPATH' >> ~/.bashrc.pyclone-0.13.0
echo 'source ~/.bashrc.pydp-0.2.3' >> ~/.bashrc.pyclone-0.13.0
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