The installtion of GeneWise in Centos6.5 (在Centos6.5上的GeneWise安装)

wget -c --no-check-certificate

tar -zxf wise2.4.1.tar.gz
cd wise2.4.1
cd src/
cp ~/wise2.4.1/src/HMMer2/sqio.c ~/sqio.c.bak
sed -i 's/getline/new_getline/g' ~/wise2.4.1/src/HMMer2/sqio.c >> sqio.c

wget -c
tar -zxf glib-2.10.0.tar.gz
cd glib-2.10.0
mkdir ~/glib
./configure --prefix=/home/train/glib
export CFLAGS='-I/usr/include -I/home/train/glib/include'

cd wise2.4.1/src/
find . -name makefile | xargs sed -i 's/glib-config/pkg-config glib-2.0/g'
sed -i 's/isnumber/isdigit/g' models/phasemodel.c
make all
export WISECONFIGDIR=/home/train/wise2.4.1/wisecfg/
make test
echo 'export PATH=$PATH:/home/train/wise2.4.1/src/bin/' >> ~/.bashrc
echo 'export WISECONFIGDIR=/home/train/wise2.4.1/wisecfg/' >> ~/.bashrc
source ~/.bashrc

参考: 1、GENEWISE 的使用 2、同源注释工具GeneWise安装和使用 3、genewise.rb 4、Tutorial: Getting Cegma/Genewise To Work On Centos, Rhel

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