predict target mRNA (trans) with lncRNA based on sequence (根据序列预测lncRNA靶基因（trans方式）)

发表于2019年10月9日由daizao 
#install
mkdir /opt/biosoft/RIsearch-2.1
tar -zxf RIsearch-2.1.tar.gz -C /opt/biosoft/RIsearch-2.1/
cd /opt/biosoft/RIsearch-2.1/RIsearch-2.1/
./rebuild.sh
echo 'export PATH=$PATH:/opt/biosoft/RIsearch-2.1/RIsearch-2.1/bin/' >> ~/.bashrc
source ~/.bashrc

#test
cd test_suite/
risearch2.x -c RHOC.fa -o RHOC.pksuf
risearch2.x -q mirnas.fa -i RHOC.pksuf
risearch2.x -q mirnas.fa -i RHOC.pksuf -e -15
risearch2.x -q mirnas.fa -i RHOC.pksuf -e -15 -p
risearch2.x -q mirnas.fa -i RHOC.pksuf -s 7 -e -15 -p

zcat result.gz | perl -e 'while(<>){chomp;my @arr=split(/\t/,$_);if($arr[7] < -20){print $_."\n"}}' | sort -t $'\t' -k 8n | les
此条目发表在Linux, Perl分类目录。将固定链接加入收藏夹。

发表评论

邮箱地址不会被公开。 必填项已用*标注

To create code blocks or other preformatted text, indent by four spaces:

    This will be displayed in a monospaced font. The first four 
    spaces will be stripped off, but all other whitespace
    will be preserved.
    
    Markdown is turned off in code blocks:
     [This is not a link](http://example.com)

To create not a block, but an inline code span, use backticks: 

Here is some inline `code`.

For more help see http://daringfireball.net/projects/markdown/syntax

Protected with IP Blacklist CloudIP Blacklist Cloud