predict target mRNA (trans) with lncRNA based on sequence (根据序列预测lncRNA靶基因(trans方式))

#install
mkdir /opt/biosoft/RIsearch-2.1
tar -zxf RIsearch-2.1.tar.gz -C /opt/biosoft/RIsearch-2.1/
cd /opt/biosoft/RIsearch-2.1/RIsearch-2.1/
./rebuild.sh
echo 'export PATH=$PATH:/opt/biosoft/RIsearch-2.1/RIsearch-2.1/bin/' >> ~/.bashrc
source ~/.bashrc

#test
cd test_suite/
risearch2.x -c RHOC.fa -o RHOC.pksuf
risearch2.x -q mirnas.fa -i RHOC.pksuf
risearch2.x -q mirnas.fa -i RHOC.pksuf -e -15
risearch2.x -q mirnas.fa -i RHOC.pksuf -e -15 -p
risearch2.x -q mirnas.fa -i RHOC.pksuf -s 7 -e -15 -p

zcat result.gz | perl -e 'while(<>){chomp;my @arr=split(/\t/,$_);if($arr[7] < -20){print $_."\n"}}' | sort -t $'\t' -k 8n | les
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